ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT Investigative Techniques [E05] Investigative Techniques Epidemiologic Methods [E05.318] Epidemiologic Methods Statistics as Topic [E05.318.740] Statistics as Topic Probability [E05.318.740.600] Probability Bayes Theorem [E05.318.740.600.200] Bayes Theorem Likelihood Functions [E05.318.740.600.400] Likelihood Functions Markov Chains [E05.318.740.600.500] Markov Chains Odds Ratio [E05.318.740.600.600] Odds Ratio Position-Specific Scoring Matrices [E05.318.740.600.650] Position-Specific Scoring Matrices Propensity Score [E05.318.740.600.675] Propensity Score Proportional Hazards Models [E05.318.740.600.700] Proportional Hazards Models Risk [E05.318.740.600.800] Risk Uncertainty [E05.318.740.600.900] Uncertainty ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT Investigative Techniques [E05] Investigative Techniques Genetic Techniques [E05.393] Genetic Techniques Sequence Analysis [E05.393.760] Sequence Analysis High-Throughput Nucleotide Sequencing [E05.393.760.319] High-Throughput Nucleotide Sequencing Molecular Sequence Annotation [E05.393.760.479] Molecular Sequence Annotation Nanopore Sequencing [E05.393.760.560] Nanopore Sequencing Oligonucleotide Array Sequence Analysis [E05.393.760.640] Oligonucleotide Array Sequence Analysis Position-Specific Scoring Matrices [E05.393.760.670] Position-Specific Scoring Matrices Sequence Analysis, DNA [E05.393.760.700] Sequence Analysis, DNA Sequence Analysis, Protein [E05.393.760.705] Sequence Analysis, Protein Sequence Analysis, RNA [E05.393.760.710] Sequence Analysis, RNA PHENOMENA AND PROCESSES Chemical Phenomena [G02] Chemical Phenomena Biochemical Phenomena [G02.111] Biochemical Phenomena Molecular Structure [G02.111.570] Molecular Structure Conserved Sequence [G02.111.570.580] Conserved Sequence Consensus Sequence [G02.111.570.580.175] Consensus Sequence Position-Specific Scoring Matrices [G02.111.570.580.175.500] Position-Specific Scoring Matrices

Position-Specific Scoring Matrices - Preferred

Concept UI	M0527620
Scope note	Tabular numerical representations of sequence motifs displaying their variability as likelihood values for each possible residue at each position in a sequence. Position-specific scoring matrices (PSSMs) are calculated from position frequency matrices.
Preferred term	Position-Specific Scoring Matrices
Entry term(s)	Matrices, Position Weight Matrices, Position-Specific Scoring Matrices, Position-Specific Weight Matrix, Position Weight Matrix, Position-Specific Scoring Matrix, Position-Specific Weight Position Specific Scoring Matrices Position Specific Scoring Matrix Position Specific Weight Matrices Position Specific Weight Matrix Position Weight Matrices Position Weight Matrix Position-Specific Scoring Matrix Position-Specific Weight Matrices Position-Specific Weight Matrix Scoring Matrices, Position-Specific Scoring Matrix, Position-Specific Weight Matrices, Position Weight Matrices, Position-Specific Weight Matrix, Position Weight Matrix, Position-Specific

Sequence Logo - Related but not broader or narrower

Concept UI	M0527629
Scope note	A graph of the data from a position weight matrix using the letters of the residues drawn in a size that corresponds to their likelihood in the sequence. It is an alternative representation of the CONSENSUS SEQUENCE, including more information, specifically, the information about the less frequently occurring residues as well as the most frequently occurring residues.
Preferred term	Sequence Logo
Entry term(s)	Logo, Sequence Logos, Sequence Sequence Logos

Position Frequency Matrices - Related but not broader or narrower

Concept UI	M0527621
Scope note	The tabular notation of the count per position of each potential residue as observed from an aligned set of sequences.
Preferred term	Position Frequency Matrices
Entry term(s)	Frequency Matrices, Position Matrices, Position Frequency